There is something inherently joyful about rainbow sprinkles. Whether it’s a birthday celebration or just a Tuesday morning, “funfetti” has the power to turn a mundane meal into a celebration. These Funfetti Greek Yogurt Muffins are my go-to recipe when I want something that feels like a treat but packs a bit more nutritional punch than a standard bakery muffin. By utilizing the magic of Greek yogurt, we achieve a crumb that is incredibly moist, tender, and slightly tangy, providing a perfect backdrop for those sweet, crunchy sprinkles.

In this guide, I’ll walk you through how to achieve that bakery-style high dome, the best type of sprinkles to use so the colors don’t bleed, and why this specific ratio of fats—butter and oil—creates the ultimate texture. Get ready to fill your kitchen with the sweet scent of vanilla and the bright colors of a rainbow!
Why You’ll Love This Recipe
You are going to fall in love with these muffins for several reasons. First, the texture is unbeatable. Thanks to the acidity in the Greek yogurt reacting with the baking soda, these muffins rise beautifully and stay soft for days. Second, they are lower in refined fats than traditional muffins, as the yogurt replaces a significant portion of the butter.
Third, they are incredibly versatile. While the kids love them for the “party” look, adults appreciate the balanced sweetness and the subtle protein boost from the yogurt. Plus, they come together in just one or two bowls with no heavy stand mixer required. It’s the perfect recipe for a rainy afternoon or a quick Sunday meal-prep session.
What Is a Funfetti Greek Yogurt Muffin?
A Funfetti Greek Yogurt Muffin is a hybrid between a classic birthday cake and a wholesome breakfast muffin. Traditionally, “Funfetti” refers to a vanilla cake base dotted with multi-colored sprinkles. In this version, we elevate the classic profile by adding Greek yogurt.
The yogurt serves a dual purpose: it acts as a tenderizer for the gluten in the flour, ensuring the muffin isn’t tough, and it adds moisture without the need for excessive oil. The result is a muffin that tastes like a vanilla cupcake but has the structural integrity and “wholesome” feel of a breakfast staple. It’s a “healthier” take on a nostalgic favorite that doesn’t sacrifice flavor.
Ingredients
All-Purpose Flour This gives the muffins their structure. Before measuring, stir or fluff the flour with a spoon, then gently spoon it into your measuring cup and level it off. This prevents adding too much flour, which can make muffins dry and dense.
White Sugar (Granulated Sugar)
Adds sweetness and helps the muffins turn golden brown in the oven.
Greek Yogurt
Use plain Greek yogurt (2% or 5% works best). It adds moisture and tenderness. Non-fat yogurt works, but the muffins will be slightly less rich.
Butter + Oil (Fat Blend)
Melted butter adds flavor. Oil (olive or avocado) keeps the muffins moist for days. Together, they give you the best texture and taste.
Rainbow Sprinkles
Use long sprinkles (called jimmies), not tiny round ones (nonpareils). Jimmies keep their shape and won’t bleed color into the batter.
Baking Soda & Salt
Baking soda helps the muffins rise when it reacts with the yogurt. Salt balances sweetness and improves overall flavor.
Egg & Milk
These hold the batter together and add moisture. For best results, use them at room temperature so they mix smoothly.
Vanilla Extract
Using a full 2 teaspoons gives the muffins that classic “cake batter” flavor.
Ingredient Substitutions & Helpful Tips
No Greek Yogurt?
You can replace it with sour cream (same amount). This makes the muffins even richer.
Want a Healthier Option?
Replace half the all-purpose flour with whole wheat pastry flour for extra fiber without making muffins heavy.
Oil Choices:
If you don’t like olive oil in baking, use avocado oil or melted coconut oil instead.
Sugar-Free Option:
Monk fruit or erythritol sweetener can replace sugar, but the muffins may brown less.
Sprinkle Tip:
Avoid “naturally dyed” sprinkles if you want bright colors — they fade during baking.
Step-by-Step Instructions
1. Prepare the Oven & Pan
Preheat your oven to 375°F (190°C).
Line a 12-cup muffin tin with paper liners or grease it well.
A hot oven helps the muffins rise quickly and form rounded tops.
2. Mix the Dry Ingredients
In a large bowl, whisk together:
- 2 cups flour
- ¾ cup sugar
- 1 teaspoon baking soda
- ½ teaspoon salt
Whisking mixes everything evenly and adds air to the flour for lighter muffins.
3. Mix the Wet Ingredients
In another bowl:
- Melt the butter
- Whisk in the oil, yogurt, milk, egg, and vanilla
Mix until smooth and creamy with no large yogurt lumps.
4. Combine Wet + Dry
Pour the wet mixture into the dry ingredients.
Using a spatula, gently fold until just combined.

Important:
Stop mixing as soon as you no longer see dry flour. Overmixing makes muffins tough instead of fluffy.
5. Add the Sprinkles
Gently fold in ½ cup rainbow sprinkles.
Mix just enough to spread them evenly — don’t stir too much or the colors may bleed.
6. Fill the Muffin Cups
Fill each muffin cup almost to the top for tall, bakery-style muffins.
This recipe makes about 15 muffins, so bake in batches if needed.

7. Bake
Place the pan on the center rack and bake for 15–17 minutes.
Check at 15 minutes by inserting a toothpick:
- Clean or with a few moist crumbs = done
- Wet batter = bake 1–2 minutes longer
8. Cool
Let muffins sit in the pan for 5–10 minutes, then transfer to a rack.
This helps them set so they don’t break apart.

Expert Baking Tips
- Don’t Overmix: I cannot stress this enough! Lumpy batter is okay. Smooth batter usually means overmixed muffins.
- Temperature Matters: If your yogurt and egg are cold, they might cause the melted butter to seize up into little clumps. Try to bring your cold ingredients to room temp for 30 minutes before starting.
- The Sprinkle Secret: If you want that “Instagram-perfect” look, press a few extra sprinkles onto the tops of the muffins before they go into the oven.
- Check Your Soda: Ensure your baking soda is fresh. If it’s been open for more than 6 months, your muffins might not get the lift they need.
Special Section: Boosting the Protein
While these muffins already contain Greek yogurt and an egg, you can turn them into a “Power Funfetti” snack easily. Swap 1/4 cup of the flour for a vanilla whey protein powder. If you do this, add an extra tablespoon of milk to ensure the batter doesn’t become too dry.
Another tip for a high-protein breakfast is to serve these muffins split in half with a dollop of extra Greek yogurt on top or a smear of almond butter. This balances the carbohydrates with healthy fats and protein, keeping you full until lunch.
Serving Suggestions
These Funfetti Greek Yogurt Muffins are best served slightly warm. I love serving them with a hot cup of coffee or a cold glass of milk for the kids. If you want to go the extra mile, serve them with a side of fresh strawberries or raspberries—the tartness of the berries cuts through the sweetness of the sprinkles perfectly. They also make a fantastic addition to a brunch spread or a school lunchbox surprise!
Storage & Make-Ahead Tips
- Room Temperature: Store in an airtight container for up to 3 days. To keep them from getting “soggy” on top, place a paper towel in the container to absorb excess moisture.
- Freezing: These freeze beautifully! Wrap individual muffins in plastic wrap and place them in a freezer bag. They stay fresh for up to 3 months.
- Reheating: Microwave a frozen muffin for 20-30 seconds for that “fresh out of the oven” taste.
FAQs
1. Can I use flavored yogurt instead of plain?
Yes! Vanilla Greek yogurt works wonderfully and adds an extra layer of flavor. Just be aware that flavored yogurts often have added sugar, so your muffins will be slightly sweeter.
2. Why did my sprinkles sink to the bottom?
Usually, this happens if the batter is too thin. This batter should be quite thick. Also, using “jimmies” instead of heavy nonpareils helps prevent sinking.
3. Can I make these gluten-free?
Yes, you can substitute the all-purpose flour with a high-quality 1:1 gluten-free baking flour blend (make sure it contains xanthan gum).
4. Can I make mini muffins with this recipe?
Absolutely! Use a mini muffin tin and reduce the baking time to 9-11 minutes.
5. My muffins didn’t rise, what happened?
Check your baking soda’s expiration date. Also, ensure you didn’t overmix the batter, which can pop the air bubbles created by the leavening agent.
Final Thoughts
These Funfetti Greek Yogurt Muffins prove that you don’t need a lot of butter or sugar to create a treat that feels indulgent. They are the perfect balance of moisture, flavor, and whimsy. Whether you’re baking these for a toddler’s birthday or just to brighten your own morning, they are guaranteed to bring a smile to your face. Happy baking, and don’t forget to add extra sprinkles—you deserve them!
PrintFluffy Funfetti Greek Yogurt Muffins
Light, cake-like, and dotted with bright sprinkles, these Funfetti Greek Yogurt Muffins are as fun to eat as they are to bake. Greek yogurt adds richness and moisture while giving them a small nutritional boost.
- Prep Time: 15 minutes
- Cook Time: 15 minutes
- Total Time: 40 minutes
- Yield: 15 muffins
- Cuisine: American
Ingredients
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2 cups all-purpose flour
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¾ cup white sugar
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1 tsp baking soda
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½ tsp salt
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¼ cup butter, melted
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¼ cup olive oil or avocado oil
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1 cup plain Greek yogurt
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½ cup milk (whole, 2%, or 1%)
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1 egg
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2 tsp vanilla extract
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½ cup rainbow sprinkles (jimmies)
Instructions
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Preheat oven to 375°F (190°C). Line a 12-cup muffin tin with liners or grease well.
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In a large bowl, whisk together the flour, sugar, baking soda, and salt until evenly mixed.
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In a medium bowl, melt the butter. Whisk in the oil, Greek yogurt, milk, egg, and vanilla until smooth and fully combined.
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Pour the wet ingredients into the dry ingredients. Gently fold with a spatula just until no dry flour remains. Do not overmix.
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Gently fold in the sprinkles until evenly distributed.
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Fill muffin cups almost to the top for tall muffins. This recipe makes about 15 muffins, so bake in batches if needed.
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Bake on the center rack for 15–17 minutes, or until a toothpick inserted in the center comes out clean or with a few moist crumbs.
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Let muffins cool in the pan for 5–10 minutes, then transfer to a rack to cool completely.
Notes
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Use room-temperature egg and milk for a smoother batter.
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Do not overmix once wet and dry ingredients are combined; this keeps muffins soft and fluffy.
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Use long sprinkles (jimmies) instead of nonpareils to prevent color bleeding.
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Let muffins cool before removing liners to avoid sticking.




